What will we cover?
Analysis of Protein Shapes, dynamics and function: the “gray” box approach.
- How to analyze protein shapes, plot them nicely and quantify relationships between different proteins. Dynamics and function of proteins.
- Working with a mathematical interpreter -- MATLAB, to have a “feel” of different algorithms without the pain of writing significant code (tens of thousands of lines). For “real” code, see http://www.tc.cornell.edu/reports/NIH/resource/CompBiologyTools/