Clustering
Clustering of sequences/structures
Clustering and �treeing�
Example: do protein fragments (9 amino acids) share common structure? (Plastocyanin)
How to extract from RMS(i,j) matrix clusters of similar secondary structures?
Clustering by cutoff distance
C matrix for different c values
A tree according to C analysis
Clusters using eigen-analysis
Cluster using eigenvalues
Define a similarity matrix
Clustering using eigenvalues
Email: ron@cs.cornell.edu
Home Page: www.cs.cornell.edu/~ron