CS 321 Fall 2005

Syllabus 

quiz:  1 2 3 4 5 6 7 8 9 10 11 12

Homework 1 (due Thursday, Sept 6)  Solutions for Homework 1

Homework 2 (due September 8)  Solutions for Homework 2

Homework 3 (due September 15)  Solutions for Homework 3

Homework 4 (due September 22)  Solutions for Homework 4

Homework 5 (due September 29)  Solutions for Homework 5

Homework 6 (due October 13)  Solutions for Homework 6

Homework 7 (due October 27)  Problem 2 samples as text file  Solutions for Homework 7 

Homework 8 (due November 3)  1NTF.ca  T0142TS464.ca T0142TS419.ca T0142TS427.ca  Solutions for Homework 8

Optional homework: Homework 9 (due November 10)  helix.ca  1NTF.pdb  Solutions for Homework 9

Homework 10 (due November 17)   

Homework 11 (due December 1)   Sequences and Blosum50 for HW11

probability (slides)   notes-on-the side examples by Yoni

statistics (slides) updated set

HP model (slides)

more on the HP model

Project I

brief introduction to matlab: 1 2

Protein annotation by structure

    1. Motivation and Lagrange multipliers

    2. Rotation matrices

    3. Overlapping structures I

    4. Overlapping structures II

Project II  Structures to download: 1 2 3 4 5 6 7 8

curve fitting I curve fitting II

Sequence_alignment I

Project III

sequence alignment (slides)

REVIEW SESSION: Monday December 12, 4:00-5:00PM Upson 109

sample questions (I used last year exams and a few other questions I had handy. They are similar but somewhat more difficult than what you will see)