Support Vector Machine for Complex Outputs

Author: Thorsten Joachims <>
Cornell University
Department of Computer Science

Version: 3.00
Date: 1.07.2007


SVMstruct is a Support Vector Machine (SVM) algorithm for predicting multivariate or structured outputs. It performs supervised learning by approximating a mapping

h: X --> Y

using labeled training examples (x1,y1), ..., (xn,yn). Unlike regular SVMs, however, which consider only univariate predictions like in classification and regression, SVMstruct can predict complex objects y like trees, sequences, or sets. Examples of problems with complex outputs are natural language parsing, sequence alignment in protein homology detection, and markov models for part-of-speech tagging. The SVMstruct algorithm can also be used for linear-time training of binary and multi-class SVMs under the linear kernel [4].

The 1-slack cutting-plane algorithm implemented in SVMstruct V3.00 uses a new but equivalent formulation of the structural SVM quadratic program and is several orders of magnitude faster than prior methods. The algorithm is described in a forthcoming paper. The n-slack algorithm of SVMstruct V2.50 is described in [1][2]. The SVMstruct implementation is based on the SVMlight quadratic optimizer [3].

Existing Instantiations

SVMstruct can be thought of as an API for implementing different kinds of complex prediction algorithms. Currently, we have implemented the following learning tasks:

Please let me know, if you want me to add your implementations to this list.

Source Code for Implementing your Own Instantiation

Instead of using one of the existing instantiations of SVMstruct listed above, you can implement your own. SVMstruct contains an API that let's you specialize the general sparse approximation training algorithm for your particular application. Referring to the algorithm as presented in [1], you merely need to provide the code for the following: You can download the source code of the algorithm and the API from the following location:

If you are not so eager on C programming, then you might want to look at the Python interface to SVMstruct that Thomas Finley wrote. It is substantially easier to prototype in than the C version and offers the same functionality. Also, the API in Python is identical in its structure to the one described below, so it is easy to switch between them.

If you decide to use the C version, the file you downloaded above contains the source code of the most recent version of SVMstruct as well as the source code of the SVMlight quadratic optimizer. Unpack the archive using the shell command:

      gunzip –c svm_struct.tar.gz | tar xvf –

This expands the archive into the current directory, which now contains all relevant files. You can compile SVMstruct with the empty API using the command


in the root directory of the archive. It will output some warnings, since the functions of the API are only templates and do not return values as required. However, it should produce the executables svm_empty_learn svm_empty_classify. "empty" is a placeholder where you can substitute a meaningful name for your particular instance of SVMstruct. To implement your own instantiation, you will need to edit the following files: Both files already contain empty templates. The first file contains the type definitions that need to be changed. PATTERN is the structure for storing the x-part of an example (x,y), LABEL is the y-part. The learned model will be stored in STRUCTMODEL. Finally, STRUCT_LEARN_PARM can be used to store any parameters that you might want to pass to the function. The file svm_struct_api.h contains the functions you need to implement. See the documentation in the file for details. You might also want to look at the other instantiations of SVMstruct for examples of how to use the API.

How to Use

Compiling creates the executable svm_empty_learn, which performs the learning, and the executable svm_empty_classify for classifying new examples. Usage is much like SVMlight. You call it like

      svm_empty_learn -c 1.0 train.dat model.dat

which trains an SVM on the training set train.dat and outputs the learned rule to model.dat using the regularization parameter C set to 1.0 (note that this crashes for the empty API -- use one of the other instantiations from above for a working example). The format of the train file and the model file depend on the particular instantiation of SVMstruct. Other options are:
General options:
         -?          -> this help
         -v [0..3]   -> verbosity level (default 1)
         -y [0..3]   -> verbosity level for svm_light (default 0)
Learning options:
         -c float    -> C: trade-off between training error
                        and margin (default 0.01)
         -p [1,2]    -> L-norm to use for slack variables. Use 1 for L1-norm,
                        use 2 for squared slacks. (default 1)
         -o [1,2]    -> Rescaling method to use for loss.
                        1: slack rescaling
                        2: margin rescaling
                        (default 2)
         -l [0..]    -> Loss function to use.
                        0: zero/one loss
                        (default 0)
Kernel options:
         -t int      -> type of kernel function:
                        0: linear (default)
                        1: polynomial (s a*b+c)^d
                        2: radial basis function exp(-gamma ||a-b||^2)
                        3: sigmoid tanh(s a*b + c)
                        4: user defined kernel from kernel.h
         -d int      -> parameter d in polynomial kernel
         -g float    -> parameter gamma in rbf kernel
         -s float    -> parameter s in sigmoid/poly kernel
         -r float    -> parameter c in sigmoid/poly kernel
         -u string   -> parameter of user defined kernel
Optimization options (see [2][3]):
         -w [1,2,3,4]-> choice of structural learning algorithm (default 3):
                        1: algorithm described in [2]
                        2: joint constraint algorithm (primal) [to be published]
                        3: joint constraint algorithm (dual) [to be published]
                        4: joint constraint algorithm (dual) with constr. cache
         -q [2..]    -> maximum size of QP-subproblems (default 10)
         -n [2..q]   -> number of new variables entering the working set
                        in each iteration (default n = q). Set n < q to prevent
         -m [5..]    -> size of cache for kernel evaluations in MB (default 40)
                        (used only for -w 1 with kernels)
         -f [5..]    -> number of constraints to cache for each example
                        (default 30) (used with -w 4)
         -e float    -> eps: Allow that error for termination criterion
                        (default 0.100000)
         -h [5..]    -> number of iterations a variable needs to be
                        optimal before considered for shrinking (default 100)
         -k [1..]    -> number of new constraints to accumulate before
                        recomputing the QP solution (default 100) (-w 1 only)
         -# int      -> terminate QP subproblem optimization, if no progress
                        after this number of iterations. (default 100000)
Output options:
         -a string   -> write all alphas to this file after learning
                        (in the same order as in the training set)
Structure learning options:
         --* string  -> custom parameters that can be adapted for struct
                        learning. The * can be replaced by any character
                        and there can be multiple options starting with --.
For more details on the meaning of these options consult references [1][3] and the description of SVMlight. The options starting with -- are those specific to the instantiation.


This software is free only for non-commercial use. It must not be distributed without prior permission of the author. The author is not responsible for implications from the use of this software.

Known Problems


V2.00 - 3.00


[1] I. Tsochantaridis, T. Hofmann, T. Joachims, and Y. Altun. Support Vector Learning for Interdependent and Structured Output Spaces, ICML, 2004. [Postscript (gz)] [PDF]

[2] T. Joachims. Learning to Align Sequences: A Maximum Margin Approach, Technical Report, August, 2003. [Postscript (gz)] [PDF]

[3] T. Joachims, Making Large-Scale SVM Learning Practical. Advances in Kernel Methods - Support Vector Learning, B. Schölkopf and C. Burges and A. Smola (ed.), MIT Press, 1999. [Postscript (gz)] [PDF]

[4] T. Joachims, Training Linear SVMs in Linear Time, Proceedings of the ACM Conference on Knowledge Discovery and Data Mining (KDD), 2006. [Postscript (gz)] [PDF]